Scaffold Ga0186391_104703

Overview

Basic Information

• Taxon OID: 3300016964
• Scaffold ID: Ga0186391_104703
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 22 C, 35 psu salinity and 348 ?mol photons light - Bolidomonas sp. RCC2347 (MMETSP1320)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 35.66666667
  • Long. (^o): 14.1
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026197	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186391_1047031	F026197	N/A	PHLSPPPLSLMVRFALATALLAISAPGLTSALLKMPPHVSEASICEGGACEGDAMPYERVSASQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTSPCGGNDNEILSCNIDEAWTNLKLDYDGFDFEGEATPQTDAYKSWLKGHLVEGNAVAWMILWSGQTYPIYDLTPPAGMYGHVEPVIGIQSNHPLNDTKVYDDDVILHYTDGGVNTVHRTMSTLEGEWAGPGEKADCGDYSYCIGNPWGYGWAVKGFSDKVDAAPASLRVDPWLSEPDTRSGEDPNAMQGTLTATELEVGETYDIYRWDSVKDALTYTGDFVKATFKATEDTYKYVDDESFQSDSATYYRVVKK