Scaffold Ga0186415_106029

Overview

Basic Information

• Taxon OID: 3300016879
• Scaffold ID: Ga0186415_106029
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 550 ?mol photons light - unclassified eukaryote RCC 701 (MMETSP1453)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 841
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186415_1060291	F037232	N/A	MSAFKIYDLVNTVYGTGYVAAIRSDCYVVLLTHWKLAQGQSPTLYLQAEAMTLIPGALPGTVVKTPFGPAQLQSVRADNMHIAKPINWKLANNTIATMYLQPEVVQLTQTPGFNEGDEVMTVYGQGFVQSKREKEGDLVVLLRNWALAQGQSPTCYLHPSACVKIPGLQIGAAMKTVWGLMRLLSIRRDGTHVCEAMHWNLADGKPPRCYLAPEAFALVSIKP