Scaffold Ga0186384_10391

Overview

Basic Information

• Taxon OID: 3300016815
• Scaffold ID: Ga0186384_10391
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 706 ?mol photons light - Ostreococcus lucimarinus clade A BCC 118000 (MMETSP0939)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4165
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 3.145
  • Long. (^o): 42.488
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047107	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0186384_103911	F047107	GAGG	VNRVRNVGLPVGDRAFLGGERLEDAAQPREHGQAAVLELLDLEFFKVARLGEAERVEASTRVDVTDGEAIIERRVGDTGTVRFRGADENDLDDENVPEGRVARAFRRERGDGARELVRDGGAVIRGAQGTRGEPRDAGAVFGGPRAGDAEHRPAAVDHFTLGVLFVAERDDRGFATARVGTEFRVDVSLDGRGDRLGLDLGRLEGGDAADEGGSEKGRHCRNVRVQESYRI