Scaffold Ga0182046_1078522

Overview

Basic Information

• Taxon OID: 3300016776
• Scaffold ID: Ga0182046_1078522
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1800
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016276	Metagenome / Metatranscriptome	248	Y
F095149	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182046_10785225	F016276	N/A	MMIYGNTPKDIMRMMKARKAKLMAVAVIIFLAVTLIGCTAKPKPTLNALDRFWDTLGGKTTDLVKETK
Ga0182046_10785226	F095149	AGGA	MKKLILIGMILAGMTGFAQADVNKVVADITSAPAKLTTHIQSEVEKAKAYQKNSWAEAKLQLLRLKAKFIKN