Scaffold Ga0181505_10400358

Overview

Basic Information

• Taxon OID: 3300016750
• Scaffold ID: Ga0181505_10400358
• Source Dataset Name: Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3822
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181505_104003581	F014888	AGGAG	MNKAMEVLLTVVALAGLYSAILTSTLPPRNSAIRAKQAVVVADGSDPMPLCRTAHCQQ
Ga0181505_104003583	F003832	N/A	MRMIKSTAKQVGTGANWPPEEGQVISFKSSTGFETDILKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQAWRKISEVTDQEREECEERLLSMAGAGMDPRKRDQSFWAELNQYLAYTYLRFKPAESKLQDQEKDKDREKDR
Ga0181505_104003584	F005268	GAGG	VSQSDDEPDELQVWRVLSEAGLVEIRLDEFAERIRDVKRIVTGRLRDLLDFDTGVQERESVAYSLGTLTGLELKVLANAPKPPDPSKI
Ga0181505_104003585	F025325	GGAGG	MVSDDPKKRLQKTCDELVAAASVETDPEKLATMLEEIFAALEERERTRSLRQNPSCF