NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182043_1473352

Scaffold Ga0182043_1473352


Overview

Basic Information
Taxon OID3300016748 Open in IMG/M
Scaffold IDGa0182043_1473352 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011502CT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065673Metagenome / Metatranscriptome127Y
F074968Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0182043_14733521F074968N/ALIYSDKKFKDYLDRYQRTLKERNRSKIRFESFKAFRDDLRTKVVNERELAKHL
Ga0182043_14733523F065673GGAGMSDKILSEEELEIETYKSDYIKEHIIAKHMSDIQVMSKLISSINEYIIRFGRTSNVHDQLIDLKAQVIKNRDHLNDWVN

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