Scaffold Ga0182078_10047318

Overview

Basic Information

• Taxon OID: 3300016747
• Scaffold ID: Ga0182078_10047318
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 504
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010001	Metagenome / Metatranscriptome	310	Y
F021403	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182078_100473181	F021403	N/A	LLHLIDWLTIDAIPWWVEPFTITPVIFLLIMKEHYDSLNPLHWWPMFWGYQAKLPDEDRITIRPLDTERIIEQHGGRLNVYIIDYEHIKFRKRKDAVIFGLRYF
Ga0182078_100473182	F010001	AGAAG	MQDRASKDEVRLLRAQIGNLEVQVADYQQIVKALSDKLSVYEKKYGTVFVSSRNTSDQK