Scaffold Ga0182093_1870064

Overview

Basic Information

• Taxon OID: 3300016745
• Scaffold ID: Ga0182093_1870064
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041411BS metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2153
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019251	Metagenome / Metatranscriptome	231	Y
F086784	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182093_18700641	F086784	N/A	MLEKIKKRWREWRAKWTVDHTVDVVVDLTLFLIDVIASPVLIVVRLVRYVFGEWIADKLKIGARAVVHRYQRRHPAVKRLLLIVFIFSIPFV
Ga0182093_18700644	F019251	GAGG	MCNTLHCIGDNMYLENRDTKYKKVGDKHYVEFYEDNKMLGVIDYSDHSMHYVEDAVENFLSGLMNKETIERYNINGKN