Scaffold Ga0182092_1173192

Overview

Basic Information

• Taxon OID: 3300016734
• Scaffold ID: Ga0182092_1173192
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 899
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003678	Metagenome / Metatranscriptome	474	Y
F102833	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182092_11731921	F003678	N/A	LIIASISLILCLYACMRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTMKNVGG
Ga0182092_11731922	F102833	GGCGG	MGLLDKIKSVAIPAAIGFATGGPAGAFAATVSASESEKAARKQQRLIEQNQREEQLIMSEIFGSNSYGLSNIQQAMSGQRAPTVNAGFGSSFGSFLGDVGSNIIGPLSGLFSQVRPFISQQSRGQPALPTLTNVGGQESQSSGVTQGFIGGIPNILGQASKFLRTPTGQIGTGLLTGIGGSMLAGGNGGMRITRKMKSQYRAVLNLAQG