NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181515_1374669

Scaffold Ga0181515_1374669


Overview

Basic Information
Taxon OID3300016730 Open in IMG/M
Scaffold IDGa0181515_1374669 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9085
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017344Metagenome / Metatranscriptome241Y
F032300Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0181515_13746693F032300N/AMRVLLLHPDDDFDGSWTRQHWDSVIDLGRAPKFLYDERSAALGCPVFSVFDLAIEVGDMQIWRHLFQPGMERVVDRFGIDWWDVISIVLQPELQDVRLAFRLAEMLSGCRTLAVSRPSAMAEALRLELGIPLQVVNRGLPRRVVQSVLRRGGAVADLSFVQLRQVVYDKYDPHYRWRRKLAGSTTQSSKSEPESEPVVLLPSAYSNVTKTALSYARVLPEQKFLLVLARESGAVLPLPANVQTADLASFAAKQCDRNELQKLEACWKQMEQSLAEHPAFKLPVQLGILKRGLRWLRWGLAVRDAWIRVFETRAVAGCLSADDSNPYTRIPLLLAGQRGIPAVACHHGALDCHRAFKNPRFSNYLAKGEMERDYLEHICGVDAGRIRIGAATWPPRENASLWSEGGPWITFFTEPYETDFWRAEAIYRELLPRLCAAARGSGKSVVLKLHPFESARQRLRLVARTLSERDRRLVSVTDAPLSREILQKTWCAVTVESTVACECASVGIPAFLCGWLRHAYAGYAPQYVRFGAGRMLEFPDDLLCIPDMLGAALPGSDAARRLAQPISPDALSEVLLQTQASGLK
Ga0181515_13746696F017344N/AMSAKRQISLPEELCASAERQFGARFGGLEPFLEFVLRELDRNDAEALDKTEQAVLEKRLRDLGYL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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