Scaffold Ga0181515_1364300

Overview

Basic Information

• Taxon OID: 3300016730
• Scaffold ID: Ga0181515_1364300
• Source Dataset Name: Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181515_13643002	F039911	AGGAG	MKYTIAAVLAVVAAVAGYFGIRHLTRKDLGFTPVKRYASKLAQTLLHTEATAAQEAGLS
Ga0181515_13643003	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRARPRQSALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLTKLESRLS
Ga0181515_13643004	F025427	AGGAG	MQPGEMEELLASLKTCPIQKRGLFWRLLKLYWKKLLFIVLMLVLPGGLVVLFLCVTVWALNWGHEMTAYMDETYKKWKEEHDVHSE
Ga0181515_13643005	F027079	AGGA	VIKSFLNLCLLLFLDMLAYMVAIFAAAAVAWAAVCGARWIFAALRNSVMSLRGRWRKKEMHAHAAR