NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181511_1465239

Scaffold Ga0181511_1465239


Overview

Basic Information
Taxon OID3300016702 Open in IMG/M
Scaffold IDGa0181511_1465239 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5694
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007078Metagenome / Metatranscriptome358Y
F012485Metagenome / Metatranscriptome280Y
F034627Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0181511_14652392F034627AGGMNQGIKKSAVEDCVRIKDLGYGSSHHIRMYGQQFEIVSDPIPDGNGVSVQVTSAAEPAKRTLRLPTSILVGFKDFFPKVA
Ga0181511_14652394F012485GAGGMSNPESSPEWVVSSSSAETNGHALNKELIAVASRLWPRVQIHARRELANWNPDDSVALATEVWEGVLQSVSKTLQRRKGSTAEIVDLDAYLFGVFLHRFNRALKRERRRQEMIELVPSGLDLEQLPGARDLKSANALERSILVKEAIENMDDWTRKVFAARVYGYSWKEIAERQGLSVQKAKLRFGNALRRLADRLRYRK
Ga0181511_14652396F007078GAGGLNKSKSQSVRDSTTRLQRAARERADDEARRIPWQRLLDARNEYIDWQEFSLWVRSILEVENRIPDWLVEILDDRVPGFLESEKQLTPKAAKGRPLTLRLEDWIDDHVFGFAKQEGWFSAITYYAIRDPRYQRAEVCWSECTEKWKKAEPIQYPSFEEWKSLAAQCDETAHLTAKERQARASSESVQPDRLCEAVARYLDWEAFAYWARPALERKSRPPAEVASVLERRCPGFLNASIKATQRDSGGDSQALQRLMLWIADHCFQDAQTEGWFDTILVHVRSHPRAIRTMEYADHCDELWSSELPDPYPCFEDWRRDADLYVDQGD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.