NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181511_1056922

Scaffold Ga0181511_1056922


Overview

Basic Information
Taxon OID3300016702 Open in IMG/M
Scaffold IDGa0181511_1056922 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1797
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001558Metagenome / Metatranscriptome671Y
F089724Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0181511_10569222F001558GAGGMLRVQTQELDGALICRLEGRFTGEGAEEVRTLVTRCDSKLELIVDLTDVMFIDAIGEKVLLFVKRLGAQFVAETSYSRDVCERLHLPLMGKRKSNMQVPGKSHGNGHLPRRR
Ga0181511_10569223F089724N/ARRYATVEDVRRIFADYHDALHWLAGFLIGDKLAPACVIDACNIAERQGPVFHEWLAHWAARATLRCALQMQGADIAELAATYERFERVDAKRSPLSPEDLQLLIEESDVLSARLDVLCRFVLVMHGLAKESCAEVAAQLGVSQSAVERAYCVAFDTLHLMSKRMLCNADIPAGLPPAPV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.