Basic Information | |
---|---|
Taxon OID | 3300016702 Open in IMG/M |
Scaffold ID | Ga0181511_1004060 Open in IMG/M |
Source Dataset Name | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 689 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001718 | Metagenome / Metatranscriptome | 647 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181511_10040601 | F001718 | GAG | MTTGWGQILPEKESGGDGFYYLLAVLSGVLAGWLDIKVGDLLLTTMVVLAANMLLGFMSPRKPWRWVVLVGVFVPLVDWLAYFFLSQKPQRAQIYESFLAFMPGIAGAFGGSIGRGVVNNLFAGK |
⦗Top⦘ |