Scaffold Ga0180057_1099214

Overview

Basic Information

• Taxon OID: 3300016697
• Scaffold ID: Ga0180057_1099214
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES156 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Madison
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180057_10992141	F000049	AGGAGG	MRHQKMAEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERSEVKKWLAQLLEILMAERAKDQRKNEFEQLDALIKKHENLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTREIAPSCVENVDELIERQEKSLVQLETKRGVVKDLIEKGRKILENPDKPKFLEGHVQRIEVGWDDTKQKAQERLKLLQDTKEAWVGYSENNETIIVEIEKGLEEINKVKKRFNLQSAFEDLAKRQEIFNHTRDSIMGLFNQIKHNVQV