Scaffold Ga0180039_1116887

Overview

Basic Information

• Taxon OID: 3300016688
• Scaffold ID: Ga0180039_1116887
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES053 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035194	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180039_11168871	F035194	N/A	VRHTKTSPAHPQCNAQVEVFNKTVKKFLQSFVDDTTLNWETFLPALAISYNTSYHSTIQTTPFELLFGEKARLPSFPNEDIQQIHYGETSAAERFNLLQKLRAKAHQSASEQGLKSKNSFDKNAMPHKFKIGDKVLISNDFYVGKNPKLAPTYTGPGEIIDINDTNAKIKFKNKIKVLNVAKLKHFYENVEKSAENDSEAEDFNQHSEKALTDFNDIFNKAHSEGPITRAKAKLIKYKDAAQLALMLLKSETDTINSLCDPSDHCGCCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAEKINSTKEKCHSNVPERFREPLMRVAYKLLSRDEATFEELTPSEQKLWNSFETDQIYRLLTGEPDTVPEF