Scaffold Ga0126362_10282970

Overview

Basic Information

• Taxon OID: 3300016461
• Scaffold ID: Ga0126362_10282970
• Source Dataset Name: Continental margin sediment microbial communities from China - ANME2c_DSS_Sorted metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 628
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora → Bovidae → Bovinae → Bos → Bos grunniens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment → Continental Margin Sediment Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: China: Qiqihar, Heilongjiang
• Coordinates
  • Lat. (^o): 47.5233
  • Long. (^o): 125.0078
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014346	Metagenome / Metatranscriptome	263	Y
F062313	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126362_102829701	F014346	N/A	GEEGPLDCKEIQPVHPKGDQSWVFIGRTDVEAETPILWPPNEKS
Ga0126362_102829702	F062313	GGAGG	MTEDEMVGWRHRLDGHRFGWTLGVGDGQGGLACCGSRGCKESDTNELLN