NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182038_10512562

Scaffold Ga0182038_10512562


Overview

Basic Information
Taxon OID3300016445 Open in IMG/M
Scaffold IDGa0182038_10512562 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011271Metagenome292Y
F029309Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0182038_105125621F029309AGGAGMMINKVRTKKKYPFKQMSPGETFKLNDVNVRDAQKAAYYYRSLCKRPISIVITKQDDGYYCRRVA
Ga0182038_105125622F011271AGGAGGMRRNRTRSVGRRSRIDFQLEPKERQALKLAEIREALVAAGYDTTAKQAAVLGVGRSTAWWLLNNDRRYGPSAKVIKRILSSPQIPKRVRRKVEQYIEDKIRGRYGHSEERTHWFGAQFHIHHSDLKPKY

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