NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182038_10338410

Scaffold Ga0182038_10338410


Overview

Basic Information
Taxon OID3300016445 Open in IMG/M
Scaffold IDGa0182038_10338410 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015906Metagenome / Metatranscriptome251Y
F018405Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0182038_103384102F015906GAGMSTGKVYKQAIKRVFAEKYHDERMAVYWGREDDTIHVIASLRHYVHKIASANEDTLEFVSSVGDSVTVKLTDDERRELLGQSPAIH
Ga0182038_103384103F018405GAGMNTSDIYRQAIKRTFANLYSVARQEVDVSWNQDGDNITVRCAGKTFTHEAIHDDDGGALEFVSIHEDPVTVRLTNDERLRLERTDLDRLNGF

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