NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182040_10804401

Scaffold Ga0182040_10804401


Overview

Basic Information
Taxon OID3300016387 Open in IMG/M
Scaffold IDGa0182040_10804401 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011279Metagenome / Metatranscriptome292Y
F083287Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0182040_108044011F011279GGAGMPKINLSRMTVEGLMDLRERVEETLHKRRAELQQQ
Ga0182040_108044012F083287N/AGNPERYQLRNELEPALDKLIERKFEDFRLGFIEGKDVNATTHNTLNIIKSNISNSVVQITQSGKDAISKDTAQKLEKIIISEEIKGLPEEDRLDVLDQADDVIKELSAPVTDKGKVYRGLKRLARFISSVATQSGR

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