Scaffold Ga0182034_10009585

Overview

Basic Information

• Taxon OID: 3300016371
• Scaffold ID: Ga0182034_10009585
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5364
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012499	Metagenome / Metatranscriptome	280	Y
F016713	Metagenome / Metatranscriptome	245	Y
F029340	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182034_100095851	F029340	GGA	MRVQTFQPMRIALLTLLSVLLGACGSTETPKIDNSDYAIDTYSPGQYEIARAEERAKKFWLENAVRYGNEPHYLAIDTTKLLEGEIVQDLWPKLINSAHTTSFFAGSLEEYPQVNIYCVMIFDTNTGKFVSNQGYAIVDFPRKGQVARFGHYVARFIGSGS
Ga0182034_100095853	F016713	GAG	MKRYLFVVSASFLVTASAALAQQFTTSPRVPPQAGVPRPLVEQNSNSSWFKKFQAAPNKLQLLNPAAPRQYGSGEQVVVADTLDPKERPKFVRLFSIVF
Ga0182034_100095854	F012499	AGG	MFSRGTLNCLLGESKNSFNLRGMFRSILFVAWVACITVINQAYGNEPITDPIADYLAMDVPDRVSNAGRLLIIKRVEVDLEGNGKNEIFVGTWYRNSGPNTWLWAGYAPIAGGYKRITPARSDVLIDFDGIYVGDIPELGRHGMAQAYSLELDNKEREQSNMISDVTFYYLEDGELLQKGTGALDRDDPEQEAKFEFFFGQNRKVSATPRIESFTVQELASKGYRIPGVASPK