NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182032_11156550

Scaffold Ga0182032_11156550


Overview

Basic Information
Taxon OID3300016357 Open in IMG/M
Scaffold IDGa0182032_11156550 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011057Metagenome295Y
F026768Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0182032_111565501F011057GGTGGMPRDGAITFRDIVGKLDVITVQCDRCGRFGRYHVDRLIERYGIDAKLFEWEPEAACPRKAARNEHDPCGARFPYLF
Ga0182032_111565502F026768N/AVIEPTGGPGVELATLEDAARFVALLRPFRQARPHWDFAAELLLKAAETGEESDIEMATAQMERALRVEGWL

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