NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182032_10010539

Scaffold Ga0182032_10010539


Overview

Basic Information
Taxon OID3300016357 Open in IMG/M
Scaffold IDGa0182032_10010539 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4971
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026106Metagenome / Metatranscriptome199Y
F028286Metagenome / Metatranscriptome192Y
F037388Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0182032_100105392F026106GGAGGLPRRVVRTIFRAAAASAVIATFGLTTAGIAHAATGRVQVFYGDHSAGYDHYAGYDTASSNNWLFRYVATTVPVQACRIAPDKNPDAEVQLWSGTRWLALIAVFCNGGAGSVDFYADKSATTHAVGAFRMSPRVGDRLRISIFRNVAGHRDSFTVTDLRTGQSQTVRVTTSAAVAYHHAFLGSFINSNADVMPMPATRELLWTFQNTRVVTYSGVGGTLFGPWATGVETDQTSAGVTVMYPGTPSSSGASFSTYLHAAP
Ga0182032_100105393F028286AGGAMNGSIIAVLPFAVMFGIVGYRVGTRRGRAVLGAVLGFALGLIGLGIFMLIPRTAEAQARHDRERAERQQPEQPAENQDIVR
Ga0182032_100105394F037388AGGAMTDQATAKTTAQQPSQPAPAKHDTLAVLAFIFGILLWPLGIYLGHASCQEAVLAGRKCSALALAGMTVGYAAVSVVSVLFVSGLVGIATGNGG

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