Scaffold Ga0182032_10010539

Overview

Basic Information

• Taxon OID: 3300016357
• Scaffold ID: Ga0182032_10010539
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4971
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026106	Metagenome / Metatranscriptome	199	Y
F028286	Metagenome / Metatranscriptome	192	Y
F037388	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182032_100105392	F026106	GGAGG	LPRRVVRTIFRAAAASAVIATFGLTTAGIAHAATGRVQVFYGDHSAGYDHYAGYDTASSNNWLFRYVATTVPVQACRIAPDKNPDAEVQLWSGTRWLALIAVFCNGGAGSVDFYADKSATTHAVGAFRMSPRVGDRLRISIFRNVAGHRDSFTVTDLRTGQSQTVRVTTSAAVAYHHAFLGSFINSNADVMPMPATRELLWTFQNTRVVTYSGVGGTLFGPWATGVETDQTSAGVTVMYPGTPSSSGASFSTYLHAAP
Ga0182032_100105393	F028286	AGGA	MNGSIIAVLPFAVMFGIVGYRVGTRRGRAVLGAVLGFALGLIGLGIFMLIPRTAEAQARHDRERAERQQPEQPAENQDIVR
Ga0182032_100105394	F037388	AGGA	MTDQATAKTTAQQPSQPAPAKHDTLAVLAFIFGILLWPLGIYLGHASCQEAVLAGRKCSALALAGMTVGYAAVSVVSVLFVSGLVGIATGNGG