Scaffold Ga0182035_10250974

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182035_10250974

Scaffold Ga0182035_10250974

Overview

Basic Information
Taxon OID	3300016341 Open in IMG/M
Scaffold ID	Ga0182035_10250974 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1428
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013984	Metagenome / Metatranscriptome	266	Y
F021202	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182035_102509741	F021202	GGA	MNPNNRIGRRERREILKSMQGLGEGVVVVDKGQVESLRPNTILRALEESMARRYREGHMWPRLPRQFWVKPG
Ga0182035_102509743	F013984	N/A	MGEVTIETDGIDAFVVYNGVRIAKRGQPNSPQSGTWVSLEPGFRVFHKGYPAKLVIERNG

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