NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182033_10276382

Scaffold Ga0182033_10276382


Overview

Basic Information
Taxon OID3300016319 Open in IMG/M
Scaffold IDGa0182033_10276382 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1376
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014660Metagenome / Metatranscriptome261Y
F040713Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0182033_102763824F014660AGGTGGMEEQYKGHVIQVTVESDHSSFPWKPICKLLDGASREFIKQLYWKIGYGMSGQAENAGLLISKKWIDAGKPNL
Ga0182033_102763825F040713N/AMDEDYKGHHIRSVPRQLPDSRRWTSHVVINWIAGSREQFRQFEIKRGFATQEEGEREGLILAKKWIDDGKPKLRERGTGPGV

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