NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182033_10001121

Scaffold Ga0182033_10001121


Overview

Basic Information
Taxon OID3300016319 Open in IMG/M
Scaffold IDGa0182033_10001121 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13301
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027982Metagenome / Metatranscriptome193Y
F042453Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0182033_100011211F027982GGGGGMGLKQHAATMPTFLLLAGIVLLVADYSFAQDSPDPTPMQCQLIRLAVAQYGFTAARRHALETYGPEAVKTGDKCFTNVGLRLRARTKRH
Ga0182033_1000112112F042453AGGAGGMTNRDRAELQVAAVIGAVLGGVPGYLLSSLVESGGWLKILIWALIGAVVATGMVFCLQALRQ

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