NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_10364739

Scaffold Ga0182041_10364739


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_10364739 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1218
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028383Metagenome191Y
F037519Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0182041_103647391F037519AGGVRRQQLLIWAAWLVYVAAWFLPIVKEGVTLPGGLPGWQAFRVATCAVWSCADISIDKWHKTALFTTSAVTTLLFVPGSVWAVWGGSRALRRPSAWIATLAFVVNAHWYVLYGGSARQDLRIGYFLWWLSFLLLALGPFDLSRPEAGKR
Ga0182041_103647392F028383N/ALYSQHSMKLELTKHLDKVRATVTEVDRTVSSHKYPSDRRTVMVMGLLSTIIQHHPSMLHLIKSAGTAGSSWALARDILKGTRYGLWINPCATEEQILQIEEADELPFSIPEVIKEIEAAYRTDRFFEGLKNRWGTQLYKYSRSDIFELGCWEIDASSGLHLDDGEIREATTIATLCIVLLAGKFLSGQGHSADCEQIETLAEDYATRAS

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