NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_10346055

Scaffold Ga0182041_10346055


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_10346055 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1248
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y
F006905Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0182041_103460551F006905N/AYPDRNREVNRFLPPLASAIYAIMKEQDAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICPRPGGMTT
Ga0182041_103460553F002850N/AVTGIHADIDALKGLRGALVRYRHAQREVTARGEDQLRVTRASLEAKAGHCRTQLELNQAELGACQDRAAREAADETAGGPVDCSGYARAVEQCGERLESIRRWQQRIDAEASEFGGIAGRFADLLENELPRLEEHLTAIIASLEAARRVQAPAS
Ga0182041_103460554F004352N/AMISRPDQDGDQQLRLLDDAWGRAAEHWRDGTARQFGATQLTPLLQESRSYLEALRKLMDVLEA
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