NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_10065175

Scaffold Ga0182036_10065175


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_10065175 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2352
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002385Metagenome / Metatranscriptome565Y
F031987Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_100651751F031987AGGAGMEEQDDCTSGVCPGASVTGETVSIYVDHHHPLLQLKRALPWQALCEVMTRHWRQAGKNTDGRSGLPWDVALYVPLV
Ga0182036_100651753F002385GAGGMRQGAPPAQAVSQQARELSQVLQKVMRSFGRQCRGQGKVFVKLVRETEGHLLVLGHPIEAWSQQARECLHQDRVRRQAQRERLLRDLEATHTAHRPITQQSQRLTQGKKLAQCKIVHAYDPTIAPILKGKSNCPAQFGRKTGIVSEPASGFIFANRVPAGNPSDPSYVLPLLDKVQHAMDLVVGPQRLRVHSLGGDLGINDTQLRQALHARGILTVGIPTSVEPIHPTPSPEEVLEILNTSRLHRIRTPHQVHLACASGYSRPVVEGHIATLMARGADQVRYKGLEGAVIQMGMIVMAHNGAVLVRIQQQRLSKRGQKFRRLLGLKQYKTNKINDSKN
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Biomedical Sciences Research Center "Alexander Fleming"
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