Scaffold Ga0132255_103643957

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0132255_103643957

Scaffold Ga0132255_103643957

Overview

Basic Information
Taxon OID	3300015374 Open in IMG/M
Scaffold ID	Ga0132255_103643957 Open in IMG/M
Source Dataset Name	Col-0 rhizosphere combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	655
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location Name	University of North Carolina
Coordinates	Lat. (^o)	35.9	Long. (^o)	-79.05	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011696	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132255_1036439571	F011696	N/A	MEGEYRMRKRRVMAKAKVYGFSPWVDQVDAINQIMKETGEKTESVLLRKLVDEALEARRKKRSSVPLTEESHTESSGRLENIESLLMRLVRQGDTSLRILDVSLALLQDVLAEAHATRRISWESLVMPQLREQGIGANELEHRFMLQVDRAK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.