Scaffold Ga0132255_100008368

Overview

Basic Information

• Taxon OID: 3300015374
• Scaffold ID: Ga0132255_100008368
• Source Dataset Name: Col-0 rhizosphere combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11928
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011880	Metagenome / Metatranscriptome	286	Y
F019498	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132255_10000836810	F011880	AGGAGG	MYRRPETKAAEEKVYKQKQIGEFMTTWKDFPRPGLAAWAERRKAGLMGTAKSTRYTPRFRPFDMLRVPNQSLVILENEYHRIGVESVVGVQDSFRRYIDADMVYFQFCGNSTVETEFGVYEMEPGEVMLVPGGIAHRSIGRDDSLRYFCQSHEAVDYVMKEDQYTSLTSFEVKRIGGPNWTAPQGANAPAKGPVVEQMHFWDDGPDDQTVVERDYESLVGVAGLRRGEPGSHVRKLRAFDHFTAIVGKGREDAGTQPLMESANMRIRTYNMQDEQFAFHRALRSEEVRIQFRGDALDLSEFENVEVSPGEVTIIPLGISHSVISIPPEDENFLRLNFYSKVRWRVPIDPTRHYFDSRFEIKTTVHKQAEWREKLAAAR*
Ga0132255_1000083689	F019498	AGG	MHDLFLVLAAISVAMFFQLPLAISQEKERSATANSGETVRIWFGANYGRRCATAGPPVFNLISKPSLGEVTTELADYTVPSGQNCAGRTYTGLRIWYKAGSTAGTDMFKYTIKFPHEPSNPTPSKGPQPVTVTVVVR*