NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132257_103758430

Scaffold Ga0132257_103758430


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_103758430 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)552
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014722Metagenome / Metatranscriptome260Y
F045341Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1037584301F014722GAGVPTLAKVYEDHAEDCTRAAEQTDDPVFRKMLLMLALQWKLAAQEEASKQSTQRS*
Ga0132257_1037584302F045341N/AADLVNDILADMCGLIAKTIALIPPEHDDERLSACAFVLDQINETVQRTVNPDRTEH*

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