NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132257_101099921

Scaffold Ga0132257_101099921


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_101099921 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1003
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016614Metagenome246Y
F046295Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1010999211F016614AGAAGMRRVLVLLVIVAIGIAVLAALWIFRGREISSFIDRYWTVEVQSAPIHSIAYEGSGTGGMLICDGVSISLNDVTPGLSLSVGSIKDNQLALASSGKVFPFGPLKSVSGDTPERLAT
Ga0132257_1010999212F046295N/APDARFSRWIKLADTHGAELIARPFNKETLRRGVIPEFLQSVGITSSQFRDRTVRRNEAVGPFTVSVAREVLRSIGKEMTWLQAKKCKVELAGYLSQNNCTDAGYCGLSTMLARHIEEELRCDNDTFAQGVWGKGWADVFAADVSEQFTPNDFEVRQPDWFTARRLRRAIGKMTDFARQTLLDPALAVEAPWNDVAHRSGLVSRE*

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