Scaffold Ga0132257_100254941

Overview

Basic Information

• Taxon OID: 3300015373
• Scaffold ID: Ga0132257_100254941
• Source Dataset Name: Combined assembly of cpr5 rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2096
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132257_1002549411	F006575	N/A	AHRLLAGDQERAGMLAAECEDLLYLTRELLKSTGRARILTVVPAPRMADESGGDRQAQLCDAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALAGLLASAGEESAATELRIRLGGAVWEAHREHLRAISNNMPPAAIELAINALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMQKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRQPGGPTT*
Ga0132257_1002549413	F002850	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTAQGKDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVQQNSEQLEQIRLWQQRIDAEAGEFSGIAGRFADLLENDLPRMEEHLVAIIASLEAARRVRAPAS*