NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132257_100116201

Scaffold Ga0132257_100116201


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_100116201 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3101
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006399Metagenome / Metatranscriptome374Y
F029198Metagenome189Y
F097840Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1001162011F097840N/AMLLQFSDFAALCVWRAKCDDTAAVRTVTQAAAVLKDNSDEGVEMYSTTSLNGVPTIQRGGRNILGVLDQNWEFANEICDLLNSLEDDPHIFLTEYDRKWLKAMDRAFRK
Ga0132257_1001162013F029198GAGGMDSNANSRAIRVHGEVIVLHCWACGTAHCVNLELCVPGELTHMVCSNSNCGMSMFLINELVVDDKSRKQMTKSELNGRVTYSRFWK*
Ga0132257_1001162015F006399GGAMATLVLNPPVQSLVTEYGVFWQCWPQFEQTHGERRLVGFEVELIGSHTSNLNHVDPRCPRCQNVRAVLLSIANLVPADLAVGVNSVMYNIDSHSGAILCLPALGNRSAVWVSIYLSWNRSNGQSFETDLLTEVRALLNKWVIHQR*
Ga0132257_1001162017F001596GAGMSWFHSSTGPADARNHASPAEVVACFQDQRNVLGRLAFLITGDHATADQAIVQACEITLRGNRPFRNWLLEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSRGDAEERAASLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLTANCHVLTWLQERHVTAPEKNRDASHAV*
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