NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132256_100876339

Scaffold Ga0132256_100876339


Overview

Basic Information
Taxon OID3300015372 Open in IMG/M
Scaffold IDGa0132256_100876339 Open in IMG/M
Source Dataset NameSoil combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012806Metagenome / Metatranscriptome277Y
F023944Metagenome / Metatranscriptome208N

Sequences

Protein IDFamilyRBSSequence
Ga0132256_1008763391F012806N/AVRTGQREQAAEVIAGTTEPPPHIINDDAAIDSAFFGSHADRTCYARARHSGWGLVVRQISGQREPPVMLRVWGRVEKVPEDDASCLALWERCANPR*
Ga0132256_1008763392F023944GGAGVNLDQKTPRFEGFVAAFAKATQISDVPDEAITTDTREPSYIFLAAEWNRSSISERAYLLAMLFGREFDVDANALSLHIASIGEPDGSALTARADLGMVSDEDVPRTVAAD*
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