Scaffold Ga0132256_100313654

Overview

Basic Information

• Taxon OID: 3300015372
• Scaffold ID: Ga0132256_100313654
• Source Dataset Name: Soil combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: USA: Bethesda, Maryland
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F006905	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132256_1003136543	F002850	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTAQGKDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDRPVDCSGYARAVEQNSGRLEQVRLWQQRVDAEASEFSGIAGRFADLLENDLPRMEEPLVAIIASLEAARRVRAPAS*
Ga0132256_1003136545	F006905	N/A	NNMPPAAIEPAINALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMQKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRQPGGPTT*