Scaffold Ga0132256_100007244

Overview

Basic Information

• Taxon OID: 3300015372
• Scaffold ID: Ga0132256_100007244
• Source Dataset Name: Soil combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9531
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: USA: Bethesda, Maryland
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004506	Metagenome / Metatranscriptome	435	Y
F061056	Metagenome / Metatranscriptome	132	Y
F097684	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132256_10000724412	F097684	GAGG	MSSVARTVVQGSDSSLAKGRQPRKFTPENIARIKDWVARGVGRDEIANRLEVTVNSLQVTCSRLGISLRKKSLANGNGSIQPPGVVQRSIEQMRQNDCSARPKFTLLIQKQCSQVASDLPLSPILIEHLGLEASVRGQTIVGLIGKIVRQVVEKDLAGEILGTGTRSPKVDFCNIALRNYTKHPFI*
Ga0132256_10000724418	F061056	AGGAG	VLGPLILKRANAPRLSGQWRDDDYDVPEDGVVVGRIFCLDAVGSQGRPWMWASGHNGDIRRAAHGYKATREAAMTAFAKSWRRQ*
Ga0132256_10000724419	F004506	GGA	MLTIIKASLAGSALMLLAGCNGYLTNYQTPCVQGHVCECVQYTTWNRSWLDCRDYGRARR