Scaffold Ga0132258_13892697

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_13892697
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004499	Metagenome / Metatranscriptome	435	Y
F049300	Metagenome / Metatranscriptome	147	Y
F075478	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_138926971	F075478	N/A	FETVKPPQHSVAIKIVQKDAGTPVEDAQVRLGVYFAYSDSNGVATVAMPPGTYSLDVLKTGFEAPSRVLDVYGDVTVEVEVAAIPQENPDAYWLFDPTKRV*
Ga0132258_138926972	F004499	GGAG	MRTKKTVAAVVIVGLLSLAAAAGAANDEKTITGVISKVDLATRIATIPPASGAPIVVQFAFNAGGPCSSCLGSGRSGPTFAETMTEGSTWTLTYTSSIPEGTATWFPGGTVNTVYRAVPVKSK*
Ga0132258_138926973	F049300	AGGA	MSRVSGAAIALGVLLATTAVPVAARAECYLENVASAQEIAAGWTIHEDHRIVKQVDSVPYEQDGRGNWFVDRETT