Scaffold Ga0132258_10561560

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10561560
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2861
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → Nitratireductor soli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019737	Metagenome / Metatranscriptome	228	Y
F052902	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_105615603	F052902	N/A	MALDEPPKEADDATGALGKGTIGCAGSVVAALILLLFGTYLVTWFQNPSLRIVGSIERWVYFIGNFVVACYCFPAYKVGKQRAFLYLAFAALGFAYGTLFTLLFGTRLPPDSSRSQLVLFYGLKHFIETAGLILYAAGVVSLAREAQRRTMRSNHSMKPTAGRCTERREDEL*
Ga0132258_105615606	F019737	N/A	NMPPVHEMSQESIYSTLYATLALTDSIFQIWITLTFAVLIATYVAERRFDSGLYRLVAGLYAFASGILFVRFASAAYQAFHYKNLLRTRGFEPWPVPNTVSLIIGIGTFVFLLSGTVGTLWFVRSAWKRGAHQR*