Scaffold Ga0132258_10526617

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10526617
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2959
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008771	Metagenome / Metatranscriptome	328	Y
F009707	Metagenome / Metatranscriptome	314	Y
F040223	Metagenome / Metatranscriptome	162	N
F066180	Metagenome / Metatranscriptome	127	Y
F070506	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_105266171	F040223	AGGAGG	MTGAMRDALELIRSLKKRYPDDTEDQLVSRFQKELEADRALKRAVMREVFNDLLQELDEGKPPNGPGIPGRG*
Ga0132258_105266173	F009707	GGTGG	MTEQPFLNTGKEWSKKDLFSLRNRIEHGRTVAHIATFLMRTETEVREKAAELGLTLPQ*
Ga0132258_105266174	F008771	N/A	MYPSNRPPPRPTISPVLRVTLQGSEIVVTATDSDYVMTYHKPANSPLLLARSFPRKEDRLVSMTLADFLTSAYKLANDKARKLGWIA*
Ga0132258_105266175	F070506	GAG	MDTKTNPRLPLPKIDQLVDDAKTELKRVGIETEGKRSDEILKMAREERNKPRVA*
Ga0132258_105266176	F066180	AGGAG	MASQYPVGDHEDPALLVLEEAFYDVWAVLAAHEPYRDRTHDHERKVELSRTLMEFVSNGVTDVAELRRLGLKSLSLPPSH*