Scaffold Ga0132258_10521516

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10521516
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2974
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007280	Metagenome / Metatranscriptome	354	Y
F032369	Metagenome / Metatranscriptome	180	Y
F062206	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_105215161	F007280	N/A	LPGKLDNIGRETLLVVTTARDLELCRAMLPKRRTGATLGDLQLRSHLLNAGTASRGA*
Ga0132258_105215165	F032369	N/A	MKDVSVDCTTVLQLDANGTDSALDPATDCHILRYDAALNLCAIVYLEIRGADFAFDSAEDLRWTITFDLADDRHVGADARGRSRFCRWF*
Ga0132258_105215166	F062206	N/A	YLPGILHMLEQQGWVVSALVDGIQPPKRLWHLRKQAKETFGL*