Scaffold Ga0132258_10471521

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10471521
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3133
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053946	Metagenome / Metatranscriptome	140	Y
F092647	Metagenome	107	Y
F094128	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_104715213	F053946	AGG	MGNGLWRDYLRNPREFDKWLTANAILSSILAAAMLAMALAGLYSAGPPNGTTEFSSVNVLSK*
Ga0132258_104715216	F092647	AGG	MHDRDPFRAPRREPKLSTFRRPAHGVGEKPAPEAARLRLIGPMTGEQKLGEGLRDLPLGGGTIGLGRVTEKP*
Ga0132258_104715219	F094128	N/A	VVGRIFFLDAVGPQSRPSMWASGHNGDYRRAAHGYESTRGAAMAAFAKSWRRE*