Scaffold Ga0132258_10465785

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10465785
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3153
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001223	Metagenome	743	Y
F047296	Metagenome	150	Y
F101824	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_104657851	F047296	N/A	MDLLPGETISAITATARDSRSRNYSLKVEFLGKVPNLTSLSQLVVRLPDELAQAGDVSVSVSLHGQTSNEVLVNIEVQTQPRTATLPARRITNGHDNYVDSAFSFELGMNGTLAELLTRNDWDLQFGNNPNIDTFNVSMVGDDRSRIQDLGALNWGDTFQVPVLTPHPVPAIEPEVITVVGHMYVVHTKDTETDLYALFRVETLDPGKS
Ga0132258_104657853	F001223	AGGAG	MKCLVTIKSFILAFALLLGTIPVRATERPYAGNGNGMATFITDGSGNVVGGTVVVSGTATHLGLFTGTGTIQFIPDANDPFISHPAGEVTYVAANGDRLPTIIDEGRMDLRTGIATGYMVFQSGTGRFEGASGKAAIVVEQNFITGAYTFTLVGNINF*
Ga0132258_104657854	F101824	AGGAGG	LRTILPFYLLLIAVMWSCGLPAQTRKNPLRPSDLIENPNAYLNQIVDLEILEPLYGPSNPEALARVEYGQVELRMPEGMSGTLSLVPPAYKPTDPNRYRNKFDRVIESPVRVKGEFWNDDEMAKATHRPAFVVHVLSMEPIVMGPPHKIASLNVIKNDPAQWDRKQIEYEGVYRTGFEVSALDEMWLETAPNTKIIKPGSMSSQANRVRVTGILFARPGARYGHMGGYKYQLTASKIEYLRAVN*