NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_10350077

Scaffold Ga0132258_10350077


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_10350077 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3652
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000461Metagenome / Metatranscriptome1108Y
F002604Metagenome / Metatranscriptome544Y
F043662Metagenome / Metatranscriptome156Y
F092575Metagenome107Y
F101758Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_103500771F101758N/AMRATEGKRTALSTSNTKHKKASTMKSIPPDSYLKDYKKRRSAFLEELIASTPNLTVRAKEFRRWIDENSPHSDNDEA*
Ga0132258_103500772F043662AGGTGGVTVSSFTNVKASIYNDNATLFCLSWEHDGARYYVWIDRHSYTIEADPAFRRRPTLYMTRPQGVRVGMDGYFRTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKLKARERD*
Ga0132258_103500775F092575GGAGGMNSEPNSYLSQKAPQWMRDMFEELEELFPDTDKLNLEEMQQRLDELEQPIVAASEQPSGSGSARLLSRLP*
Ga0132258_103500776F002604GGAGMIGKLSIIGAVAAILMIPTAVSAQMGGMNPGVHVGGTVNPGATVRGAVERGIPGADLGTWRSPSGQVHRSRKHTKAATKQRR*
Ga0132258_103500777F000461AGCAGMTALTGMDKLLFWLGLGAAQKGAGSKPIDRRNWVVSLVVGALIAAVMIVAMFLVLVSQKL
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