Scaffold Ga0132258_10137182

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10137182
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5846
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017350	Metagenome / Metatranscriptome	241	Y
F020724	Metagenome / Metatranscriptome	222	Y
F039366	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_101371824	F039366	GAG	MSSMRPNDQMHLPGLGVPVDPWTGFALPPIITERLKKLREADRAFRLVLHELDGTTEGSNPGDSRMAMAFTKLEEASLWASAALLDHHRR*
Ga0132258_101371828	F017350	GGAG	MSDTPTLVRFSSGWERDGSGPDGLPLYRETTRVRMDRPPYLSIEREAEEQDYIDHPGPYELYRKTCEARKEIVGYPLALWPACPPHIFQMCAVRDIHTVEQLAQIVSKKRRAEAVKTIPPDIIEIADRAVKMVELHAKAGQYEEIVSGLEAQLAAVKEQFDEAISTISAQKTLIDALRLKAAA*
Ga0132258_101371829	F020724	AGG	MPRLATIVDAVSDASLEIGIVQRPVTNVVGTADQDIAQMAALLQNVADELLIDPPYRDLLGDGNWLIDNGMVVRKARPTADDDVILFDARLTVDGLKYRFLKAKGLEYGEEQRDFIARLNKIAGRNAPVIDLNEDPGRVQ*