Scaffold Ga0132258_10072176

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10072176
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8010
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002246	Metagenome / Metatranscriptome	578	Y
F003993	Metagenome / Metatranscriptome	458	Y
F039901	Metagenome / Metatranscriptome	162	Y
F046604	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_100721763	F002246	GGGGG	MSDDDETHLHVTYATHLDMDDAFSNRMCAAIAAGLESAPIGVVTTPGTKNPKYLATEPRPLVSSHRAIECA*
Ga0132258_100721764	F003993	AGG	MRRQGIEDVKGKTPVLEPSKKPRRKVSKAELRYQAEAAVLAWRAAQAAKDK*
Ga0132258_100721765	F039901	AGGAGG	MNTPANPPEDVIVDTRYIYTLALALVGLALATSAMLFLFIDF*
Ga0132258_100721766	F046604	GGGGG	MRSILACALLCAATMQAGAQYPNGLFVDGNELMTWCGPHNVAGPSDPLCLGFVAGVSDAANFSRQLTRRSSNTNCIPPGTTIVQEANVVVNYINRNPDKHDLPAAALVVAAIDEAWCSQAIRSTER*