Scaffold Ga0132258_10071640

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10071640
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8039
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F031982	Metagenome / Metatranscriptome	181	Y
F061209	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_100716401	F000466	AGGAG	MAHVLNYLPRAESWKSWKNEKPYQGVVKRDWVPTGRIDFATRLNGSAHDADQPSEFKLLVEERRIVESIAGNENLEIQWRLATLKEAKAVVTQYHKYLSENSLIKSIFDDPVALPPPERNRKSMSTE*
Ga0132258_100716405	F031982	AGGA	MTTHMITEINEETLLTYEVPDEALETAVGRIIAGSYTLAACTGLSVCPG*
Ga0132258_100716407	F061209	GGAG	MRALLSALLVAGLTTGATAQQTVGPIAITNTVNGIPVTVSATSWVTTNPVGSELRVHARIFADLIDLQKKFASVVGASKLPPSKCGNRGQGNQNPVVSFKGGSLWPVDDRLVMSVRGDVDLWSCVAGPQKSAIEWKKKKILFLKVNLPERHTWRPMKERKDGAQSFSGNMPIQLVKKDDANVSLKIAESEIKLNGEESTTNSNLAKHINQRAYNALQSAIDPAKLKMALPKELQKLNMTVVSTRFRSYGGHAIAEINLAAAGAPYTQ*