Scaffold Ga0132258_10049668

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10049668
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9586
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007479	Metagenome / Metatranscriptome	350	Y
F028225	Metagenome	192	Y
F080303	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_100496681	F007479	GGAGG	MGKTGLFAASASALILVCIAGWAVSGSQARVATPTDQIDPFKVMTSTPQLPTEHFADYSFVF*
Ga0132258_1004966815	F080303	N/A	VERGKNRGEIAELIGVTVGSLQVTCSRLGISLRRPNFNNGIVSLRRNDPRLNRVLTPGSDHGGDSALLHVERNSQPGGVDQVRTPAPKHEMEQEVNELGGATFAIRMQYRGEERTTELPLTQDMIGQLAFEAAFRNMSIGDFIGELIVAVVQQDLLQPVLECKAGGEGKETL*
Ga0132258_100496683	F028225	N/A	MTKAEQASQLIFKRAPIGWNDDDYDVLADGKLVGRIFKVPIAPQDRTWMWASGHNRGIHDAAHGYEPTREDAMAAFAKSWRG*