Scaffold Ga0132258_10041188

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10041188
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10485
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012329	Metagenome	281	Y
F029598	Metagenome	188	Y
F041630	Metagenome	159	Y
F045042	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_1004118810	F041630	GGAGG	VENSELVAKVEQWLKSVSAALHRLSRERDVLRETRTQIMMGVLSAEQAEANLARLAQGRDGDDSGLATDIVVRLRHAGL*
Ga0132258_100411882	F045042	GGA	VTRHVASGVVVLALSALAACATTRAQPLTQGTGWGYVGEPRTGTGARRVFYTPDRYVCERSRHEDVSPDFTSPPACVPLTISRGEGYWLIPALYLPTGSYIGGSTREECEALERRQGRNLPVPPHGFCQAASVQPPP*
Ga0132258_100411883	F029598	GAG	VTVERERRETIVWRYGLVWILVLACSGCAGHAGVDASDVESVAKGDKVTLLVLGTGNKWATRTEPDLYMVVTTRQSTPAEKIRTDLSECQAAARTVWNSDATERDRTILASQGPAYNPGAQVSKAAMELLAKTYENCLQPKGYVVSRAG*
Ga0132258_100411886	F012329	AGGAG	MRMRRALLLAAGFALSTLDGVAEEKRIVDVKELAGSWRGWVTEVAGDEWATMKVSADGSYKASTISVTTVGKFYLQAGKLRYRSSRTTPSAMPSAAVLGTASVSEDNGKTVLTLMPEDPNYLGRAEYERVK*